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Billing Software for Healthcare

Healthcare companies that sell subscriptions, such as telehealth, concierge medicine, or health tech SaaS, need HIPAA-compliant billing and payment processing covered by a BAA. This is different from medical billing and revenue cycle management.

Written by Rajat GuptaFact-checked by Chandrasmita

Sources we used

We rely on vendor documentation, pricing pages and other primary sources. We do not use G2 or Capterra ratings as ranking inputs.

Primary sources

  • Official vendor documentation, pricing pages, help centers, and release notes
  • Public analyst reports, market commentary, and relevant public filings
  • Practitioner discussions in communities such as Reddit

What we exclude

  • G2 and Capterra ratings as ranking inputs
  • Vendor-submitted claims that cannot be corroborated publicly
  • Anonymous summary statements presented as proof without a primary source behind them

Review standard

Material corrections can be submitted through the contact page. We update pages when a claim can be verified against a stronger source.

Read the full review methodology and sponsored disclosure.

Evidence used on this page

Billing Software buyer's guide
The full category overview, evaluation criteria and tool list.
Best Billing Software
Our ranked shortlist for the category.

What is Billing Software

Use the Billing Software for Healthcare list when you already know the broader category and need to narrow vendors by HIPAA compliance and BAA coverage.

It skips the general category questions so you can get to side-by-side comparisons sooner.

What to compare before you talk to vendors

Compare HIPAA compliance and BAA coverage, recurring billing for telehealth and membership-based healthcare, how pricing scales, implementation time, and how much admin work the product needs after go-live.

Once you are down to three or four vendors, read their software profiles, pricing pages, and head-to-head comparisons, and check the buyer guides before you book demos.

Tools to evaluate

Open a profile for pricing, implementation notes and alternatives, or compare two tools head to head.

AP, AR and spend management for small and midsize businesses, with published per-user plans and sync to QuickBooks, Xero and NetSuite.

$49 per user/monthPer user / monthCloudFree trial

AI-based order-to-cash, treasury, AP and record-to-report software for large finance teams, sold as modular annual subscriptions.

Quote-basedCustom quoteCloud

Collaborative AR automation with a customer payment portal, cash application, collections and built-in ACH and card payments.

Quote-basedCustom quoteCloud

Stripe Billing provides developer-first recurring billing with subscription management, usage-based pricing, and Stripe's global payment rails.

Contact vendor for exact pricing and packaging details.Per transactionCloud

Chargebee is a subscription billing platform with revenue recognition, dunning management, and flexible pricing model support for SaaS and subscription businesses.

Contact vendor for exact pricing and packaging details.SubscriptionCloudFree trial

Zuora is an enterprise subscription management platform covering billing, revenue recognition, payments, and subscription analytics for large companies.

Contact vendor for exact pricing and packaging details.Custom quoteCloud

Maxio (formerly SaaSOptics + Chargify) combines billing management with SaaS financial operations including revenue recognition, analytics, and reporting.

Contact vendor for exact pricing and packaging details.Custom quoteCloud

Recurly provides subscription billing with industry-leading decline management that recovers failed payments and reduces involuntary churn.

Contact vendor for exact pricing and packaging details.SubscriptionCloud

Zoho Billing (formerly Zoho Subscriptions) provides subscription billing and recurring invoicing for small businesses within the Zoho ecosystem.

Contact vendor for exact pricing and packaging details.Per user / monthCloudFree trial

FreshBooks provides invoicing-first accounting software built for freelancers, service businesses, and small teams that need time tracking and expense management.

Contact vendor for exact pricing and packaging details.Per user / monthCloudFree trial

Invoiced automates accounts receivable workflows including invoicing, collections, payments, and cash application for growing B2B companies.

Contact vendor for exact pricing and packaging details.SubscriptionCloudFree trial

Paddle is a merchant of record that handles billing, payments, tax compliance, and global selling so software companies do not have to.

Contact vendor for exact pricing and packaging details.Per transactionCloud

FastSpring is a full-service ecommerce and billing platform for software companies, acting as merchant of record for global digital product sales.

Contact vendor for exact pricing and packaging details.Per transactionCloud

Sage Intacct is a cloud-native accounting platform with deep multi-entity, multi-dimensional reporting built for growing mid-market companies.

Contact vendor for exact pricing and packaging details.Custom quoteCloud

Chargify (now part of Maxio) provides B2B subscription billing with component-based pricing, relationship invoicing, and revenue events.

Contact vendor for exact pricing and packaging details.Custom quoteCloud

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